Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015839013.1_cds_XP_016507165.1_20317
CDS Infomation

[gene=LOC107824875] [db_xref=GeneID:107824875] [protein=autophagy-related protein 18h-like] [protein_id=XP_016507165.1] [location=join(999..1001,2087..2530,2636..3079,4082..4327,4430..5224,5306..5484,7749..7834,7920..8477,8822..8826)] [gbkey=CDS]
Sequence

ATGGTTTTATGGGCTTGCTTTGACAGACTAGAGCTTGGATTGTCTTCTTTCAAACGAGTG
CTCCTTATTGGTTACTCTGATGGATTTCAAGTCCTGGATGTTGAAGATGCTTCAAATGTT
TGTGAACTAGTTTCGAGGCGTGATGATCCAGTAACTTTTCTACAGATGCAACCCATCCCT
GCAAAATCTGATGGTCGTGAAGGATATAAGAAATCGCATCCCTTGCTCTTGGTTGTGGCA
TGTGATGATAGTGCAGATTCCGCTTCAGTTCAAACTGGCAGGGATGGTTTCATTGAGCCT
CAGGGAGGAAGCATTATACACTCACCTACAGCTGTACGTTTTTACTCTTTAAGGTCCCAC
AGCTATGTTCATGTTTTGCGATTCCGCTCTACTGTGTATATGGTTAGATGCAGTCCGAAG
GTAGTGGCTGTTGGTCTTGCAGCACAGATCTATTGTTTTGATGCTCTTACCTTAGAGAAC
AAGTTTAGCGTGCTCACATATCCTGTGCCTCAGTTGGGTGGCCAAGGTGTGACGGGGGTC
AACATTGGCTACGGTCCCATGGCTGTAGGACCGAGATGGTTAGCATATGCTTCAAATAAT
CCGCTGTTGTCAAACACAGGCCGCTTGAGTCCCCAAAGTCTTAGTCCTTCTCCAGGTGTT
AGCCCTTCTACATCACCTGGTAACGGAAATCTGGTAGCTAGGTATGCCATGGAATCAAGC
AAACATCTAGCTGCTGGATTGATTAATCTTGGGGACATGGGATACAAAACTTTGTCAAAA
TACTGTCATGAGCTTCTTCCTGACGGGAGTAATTCACCAGTGTCAACAAGTGCTAGCTGG
AAAGTTGGGAGGGTTCCAGCACATTCACCTGAAACAGATGCCGCGGGCATGGTTGTTATT
AAAGATTTTGTTTCTAGAGCAGTTATTTCACAATTCAGAGCGCATTCCAGTCCTATATCT
GCTCTGTGTTTTGACCCTAGTGGCACTCTTCTTGTTACTGCCTCTACACGTGGGAATAAT
ATAAACATATTTCGCATTGTACCTTCTTGCTCACCAAATGGAGCAGGCAGCCAAAGCAAC
GATTGGAAAGCTTCACATGTCCACCTCTACAAGCTTCATCGGGGTGTAACTCCAGCTGTG
ATACAAGACATTTGTTTTAGTCACTACAGTCAGTGGGTAGCTATTATTTCTTCCAGGGGA
ACTTGCCATCTTTTTGTCCTATCCCCGTTTGGTGGTGAGACTGGTCTTCAACTGCAAAAT
TCTCATGTTGATGGACCCATACTTCTACCTATTCTTTCGGGACCATGGTGGTCTACATCA
TCTTTCATGGTCAATCAGCAGTCTTTTGCGCCAGCTCCAGCACCTATCATGCTCTCTGTG
GTCAACAGGATAAAGAATGTGAATTCAGGTTGGCTAAATACAGTGAGCAATGCCGCATCT
TCTGCAGCCGGAAAGGTTTCTGTGCCTTCTGGTGTTCTTGCTGCTGTTTTTCATAGTTCT
GTACGCCGGGAACAACCTGCTCCGCAAAACTTCAATCCGTTGGAGCATCTTTTGGCTTAT
ACTCCATCTGGTCACTTAATTCAATATGAGTTGATGCCCTCATTTGGTGGAGAACAGGGT
GACTCTTATCTGAGAACCGGGACTGCTTCAGTAGTTCAAATGCAAGAGGATGACGCTGGG
GTGAAAGTTGACTCCATTCAGTGGTGGGATGTTTGTCGAAGAGCTGATTGGCCTGAAAGG
GAGGAATGTATTCATGGCATTACTATAGGTGGCCGTGAAGTAACAGACATTGTCATGGGA
GATTCTCTTTCTGAAGATGATGATACAGGTGAAAAGGATTCTGCTAAACTATGTGACCGG
TCCCATTGGTACCTTTCCAATGCTGAGGTGCAGTTGAAGTCTGGGAGGATACCTGTTTGG
CAAAAGTCCAAGATATACTTCTGTACCATGAGTCTTTCTGGATATGAAGAGCAGGATCTC
TCTGGAAGTTTTTCTGCTGGGGAGATTGAGATTGAGAAGATTCCTGTCAATGAGGTCGAA
ATAAGGCGTAAAGATCTACTGCCTGTGTTTGACCATTTCCACAGAATTCCATCAAAATGG
TCTGATGATAGCTCTGCCATGGGTAAAGAAAAGTCTGGAGACACCACATCTGGTATTGCC
AGGGCAGACTCGCTCTCTGAGAAAAGCTTTCCTTCTGGGTCTTCACAAGTTCCTGGTTTA
CATGAAGTTGGCGTGGGTCCAATTTCTTATCCATGTATTGAACTATCTTTGGAAGAAAAT
GATGGGTTGAGAAGCTCTAGTTATTCTGTAGCCCCACAAGTGAGTAACAAAGTGCAGGCT
GGTCTAGAATCATCCCCAAATATCTTGTGCTCCGTTGAGGAAAGCTATGTTTTAAACAGT
CCGTCTCCTCCCAAAATTGAATCCTTCTCCACCCGAGGAATAAGTGCAAGAGAGGTTCAG
TCTTCAAACAGTGTTGTTACTAGTGAAGCTTCAAACTCAAGTTCCAATCGTTCCGACATG
AGTATGAACATTATTGACGAACAAACTGTTCATGAATATATATGTGACCCTGTAGATTTT
GGGCAATTTTTTCAAGAAGGCTACTGTAAGGCTTCAACTAACAATGAATTAAATGAGGTA
AATGAACTGGTTGCTGATATGGATAGCAGTAGTAGTCCTTGCGACAAAGAGAAACCTGAT
GATGATGGGGAAAGCGATGATATGCTGGGAGGTGTGTTTGACTTCTCTGAAGAAGGTTGA

Peptide Sequence

PEP ID

XP_016507165.1
PEP Infomation

PREDICTED: autophagy-related protein 18h-like [Nicotiana tabacum]
Sequence

MVLWACFDRLELGLSSFKRVLLIGYSDGFQVLDVEDASNVCELVSRRDDPVTFLQMQPIP
AKSDGREGYKKSHPLLLVVACDDSADSASVQTGRDGFIEPQGGSIIHSPTAVRFYSLRSH
SYVHVLRFRSTVYMVRCSPKVVAVGLAAQIYCFDALTLENKFSVLTYPVPQLGGQGVTGV
NIGYGPMAVGPRWLAYASNNPLLSNTGRLSPQSLSPSPGVSPSTSPGNGNLVARYAMESS
KHLAAGLINLGDMGYKTLSKYCHELLPDGSNSPVSTSASWKVGRVPAHSPETDAAGMVVI
KDFVSRAVISQFRAHSSPISALCFDPSGTLLVTASTRGNNINIFRIVPSCSPNGAGSQSN
DWKASHVHLYKLHRGVTPAVIQDICFSHYSQWVAIISSRGTCHLFVLSPFGGETGLQLQN
SHVDGPILLPILSGPWWSTSSFMVNQQSFAPAPAPIMLSVVNRIKNVNSGWLNTVSNAAS
SAAGKVSVPSGVLAAVFHSSVRREQPAPQNFNPLEHLLAYTPSGHLIQYELMPSFGGEQG
DSYLRTGTASVVQMQEDDAGVKVDSIQWWDVCRRADWPEREECIHGITIGGREVTDIVMG
DSLSEDDDTGEKDSAKLCDRSHWYLSNAEVQLKSGRIPVWQKSKIYFCTMSLSGYEEQDL
SGSFSAGEIEIEKIPVNEVEIRRKDLLPVFDHFHRIPSKWSDDSSAMGKEKSGDTTSGIA
RADSLSEKSFPSGSSQVPGLHEVGVGPISYPCIELSLEENDGLRSSSYSVAPQVSNKVQA
GLESSPNILCSVEESYVLNSPSPPKIESFSTRGISAREVQSSNSVVTSEASNSSSNRSDM
SMNIIDEQTVHEYICDPVDFGQFFQEGYCKASTNNELNEVNELVADMDSSSSPCDKEKPD
DDGESDDMLGGVFDFSEEG

Transcript Sequence

Gene sequence data has not been registered.